Rule-based Epidemic Modelling and Malaria
The Rule-based Epidemic Modelling (RBEM) Project was funded by the UK Medical Research Council project (grant X/011658/1) to make rule-based modelling methodology more accessible to the infectious disease modelling community. The rule-based approach is instead of writing differential equations, and there can be human as well as technical advantages to this. Our pre-print (draft) paper illustrates how the approach can be applied to classical problems, in addition to our previous work (cited below) on novel problems during pandemic pressures. In our team with Sándor Bartha, Akindele A. Onifade and William Waites, we modelled malaria as found in sub-Saharan Africa in areas of high prevalence of sickle-cell trait (HbAS). HbAS carriers typically do not develop malaria symptoms when tested but remain infectious to others. We considered the research question: If testing for malaria is done according to observing symptoms, does the infectious reservoir of asymptomatic HbAS carriers introduce a bias sufficient to affect the course of a malaria epidemic? We were able to investigate this more readily with our rule-based techniques than with traditional approaches, concluding that observational testing bias of the HbAS reservoir can render testing ineffective for suppressing an epidemic, which we contrasted with the effect of randomised testing. ...